Make MD plots for all combinations of a condition
MD_hicexp(hicexp, prow = 3, pcol = 3, plot.chr = NA, plot.loess = FALSE)
Arguments
| hicexp | A hicexp object. |
|---|---|
| prow | The number of rows to use for the grid of MD plots. Defaults to 3. |
| pcol | The number of columns to use for the grid of MD plots. Defaults to 3. |
| plot.chr | A specific chromosome or set of chromosome which you want to plot. This should be a numeric value, i.e. to plot chromosome 1 set plot.chr = 1, to plot chromosomes 1 and 5 set plot.chr = c(1, 5). Defaults to NA indicating that all chromosomes present in the hicexp will be plotted. |
| plot.loess | Logical, should a loess curve be plotted over the MD plots. Note setting this to TRUE will increase the computational time for plotting. |
Value
A set of MD plots.
