R/plot_functions.R
pval_heatmap.Rd
Function to visualize p-values from multiHiCcompare results
pval_heatmap(hicexp, alpha = NA, chr = 0)
hicexp | A hicexp object that has been normalized and has had differences detected. |
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alpha | The alpha level at which you will call a p-value significant. If this is set to a numeric value then any p-values >= alpha will be set to 1 for the visualization in the heatmap. Defaults to NA for visualization of all p-values. |
chr | The numeric value for the chromosome that you want to plot. Set to 0 to plot all chromosomes in the dataset. |
A heatmap
The goal of this function is to visualize where in the Hi-C matrix the differences are occuring between two experimental conditions. The function will produce a heatmap of the -log10(p-values) * sign(logFC) to visualize where the significant differences between the datasets are occuring on the genome.
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