A list of the chromosomal coordinates for 26 transcription factor binding sites from the Gm12878 cell line

Source: R/tfbsList.R

A GRangesList containing 26 GRanges objects each with the following elements

seqnames

The chromosome number

ranges

IRanges object with start and end coordinates for each TFBS

strand

empty column

coverage

a metadata column with peak strength values at each site

tfbsList

Format

An object of class CompressedGRangesList of length 26.

Source

Data obtained from ENCODE. ENCODE integrative analysis (PMID: 22955616; PMCID: PMC3439153) ENCODE portal (PMID: 29126249; PMCID: PMC5753278) Available at https://www.encodeproject.org/

Value

A GrangeList