Hi-C data from NHEK cell line - chromosome 10 at 500kb resolution

A sparse upper triangular matrix containing the interacting regions and the corresponding Interaction Frequency (IF).

NHEK.chr10

Format

A matrix with 35510 rows and 3 columns:

region1

The first interacting region - corresponds to the row name of a full Hi-C contact matrix

region2

The second interacting region - corresponds to the column name of a full Hi-C contact matrix

IF

The Interaction Frequency - number of read counts found for the interaction between region1 and region2

Source

Data from the Aiden Lab. See their website at http://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525

Value

A matrix