|
ConsensusTADs()
|
Consensus boundary identification |
|
DiffPlot()
|
Visualization of differential TAD boundaries |
|
GM12878.40kb.raw.chr2
|
A subset of chomosome 2 contact matrix, GM12878 cell line. |
|
IMR90.40kb.raw.chr2
|
A subset of chomosome 2 contact matrix, IMR90 cell line. |
|
TADCompare()
|
Differential TAD boundary detection |
|
TimeCompare()
|
Time-varying TAD boundary analysis |
|
rao_chr22_prim rao_chr22_prim
|
Chromosome 22 combined intrachromosomal primary contact matrix from
Rao et al. 2014. |
|
rao_chr22_rep rao_chr22_rep
|
Chromosome 22 combined intrachromosomal replicate contact matrix from
Rao et al. 2014. |
|
time_mats time_mats
|
Chromosome 22 time-varying contact matrices from Rao et al. 2017. |