Bioconductor R packages

We implement our methods as the R packages deployed on Bioconductor.

Non Bioconductor

  • GenomeRunner - A web server and a standalone tool for enrichment analysis of genomic regions in epigenomic annotations
         [ GitHub, SourceForge, Paper1, Paper2 ]

  • lrcde - An R package for cell type-specific deconvolution and differential gene expression analysis
         [ GitHub, Paper ]


  • nullranges - Generation of null ranges via bootstrapping or covariate matching.
         [ website ]

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